Removed MMT dependency

src/org/interreg/docexplore/management/manage/DataLinkCleaner.java

@@ -12,8 +12,8 @@ In this respect, the user's attention is drawn to the risks associated with load
 
 The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms.
  */
-package org.interreg.docexplore.management.manage;
-
+package org.interreg.docexplore.management.manage;
+
 import java.util.Collection;
 import java.util.List;
 import java.util.Map;
@@ -23,7 +23,6 @@ import java.util.TreeSet;
 import org.interreg.docexplore.datalink.DataLinkException;
 import org.interreg.docexplore.gui.ErrorHandler;
 import org.interreg.docexplore.internationalization.Lang;
-import org.interreg.docexplore.management.gui.MMTApp;
 import org.interreg.docexplore.manuscript.AnnotatedObject;
 import org.interreg.docexplore.manuscript.Book;
 import org.interreg.docexplore.manuscript.DocExploreDataLink;
@@ -31,99 +30,100 @@ import org.interreg.docexplore.manuscript.MetaData;
 import org.interreg.docexplore.manuscript.MetaDataKey;
 import org.interreg.docexplore.manuscript.Page;
 import org.interreg.docexplore.manuscript.Region;
-import org.interreg.docexplore.util.GuiUtils.ProgressRunnable;
-
-public class DataLinkCleaner implements ProgressRunnable
-{
-	MMTApp win;
-	
-	public DataLinkCleaner(MMTApp win)
-	{
-		this.win = win;
-	}
-	
-	public void run()
-	{
-		try
-		{
-			DocExploreDataLink link = win.host.getLink();
-			if (link.getLink() == null)
-				throw new Exception(Lang.s("cleanLinkNoConnection"));
-			
-			Set<Integer> referencedIds = getAllReferencedMetaDataIds(link);
-			Set<Integer> allIds = new TreeSet<Integer>();
-			Collection<MetaDataKey> keys = link.getAllKeys();
-			int cnt = 0;
-			for (MetaDataKey key : keys)
-			{
-				allIds.addAll(link.getLink().getMetaDataIds(key.getId(), null));
-				cnt++;
-				progress = .5f+cnt*.25f/keys.size();
-			}
-			allIds.removeAll(referencedIds);
-			
-			System.out.println(referencedIds.size()+" referenced annotations");
-			System.out.println(allIds.size()+" unreferenced annotations");
-			
-			win.host.historyManager.reset();
-			
-			cnt = 0;
-			for (int id : allIds)
-			{
-				link.getLink().removeMetaData(id);
-				cnt++;
-				progress = .75f+cnt*.25f/allIds.size();
-			}
-		}
-		catch (Exception e) {ErrorHandler.defaultHandler.submit(e);}
-	}
-	
-	public Set<Integer> getAllReferencedMetaDataIds(DocExploreDataLink link) throws DataLinkException
-	{
-		Set<Integer> res = new TreeSet<Integer>();
-		
-		List<Integer> bookIds = link.getLink().getAllBookIds();
-		int cnt = 0;
-		for (int bookId : bookIds)
-		{
-			Book book = link.getBook(bookId);
-			getMetaDataIds(book, res);
-			
-			for (int pageNum=1;pageNum<=book.getLastPageNumber();pageNum++)
-			{
-				Page page = book.getPage(pageNum);
-				getMetaDataIds(page, res);
-				
-				for (Region region : page.getRegions())
-					getMetaDataIds(region, res);
-				page.unloadAll();
-			}
-			book.unloadMetaData();
-			cnt++;
-			progress = cnt*.25f/bookIds.size();
-		}
-		
-		cnt = 0;
-		Set<Integer> mdMds = new TreeSet<Integer>();
-		for (int mdId : res)
-		{
-			MetaData md = link.getMetaData(mdId);
-			getMetaDataIds(md, mdMds);
-			cnt++;
-			progress = .25f+cnt*.25f/res.size();
-		}
-		res.addAll(mdMds);
-		
-		return res;
-	}
-	static void getMetaDataIds(AnnotatedObject object, Set<Integer> res) throws DataLinkException
-	{
-		for (Map.Entry<MetaDataKey, List<MetaData>> mds : object.getMetaData().entrySet())
-			for (MetaData md : mds.getValue())
-				res.add(md.getId());
-		object.unloadMetaData();
-	}
-
-	float progress = 0;
-	public float getProgress() {return progress;}
-}
+import org.interreg.docexplore.manuscript.app.ManuscriptAppHost;
+import org.interreg.docexplore.util.GuiUtils.ProgressRunnable;
+
+public class DataLinkCleaner implements ProgressRunnable
+{
+	ManuscriptAppHost host;
+	
+	public DataLinkCleaner(ManuscriptAppHost host)
+	{
+		this.host = host;
+	}
+	
+	public void run()
+	{
+		try
+		{
+			DocExploreDataLink link = host.getLink();
+			if (link.getLink() == null)
+				throw new Exception(Lang.s("cleanLinkNoConnection"));
+			
+			Set<Integer> referencedIds = getAllReferencedMetaDataIds(link);
+			Set<Integer> allIds = new TreeSet<Integer>();
+			Collection<MetaDataKey> keys = link.getAllKeys();
+			int cnt = 0;
+			for (MetaDataKey key : keys)
+			{
+				allIds.addAll(link.getLink().getMetaDataIds(key.getId(), null));
+				cnt++;
+				progress = .5f+cnt*.25f/keys.size();
+			}
+			allIds.removeAll(referencedIds);
+			
+			System.out.println(referencedIds.size()+" referenced annotations");
+			System.out.println(allIds.size()+" unreferenced annotations");
+			
+			host.historyManager.reset();
+			
+			cnt = 0;
+			for (int id : allIds)
+			{
+				link.getLink().removeMetaData(id);
+				cnt++;
+				progress = .75f+cnt*.25f/allIds.size();
+			}
+		}
+		catch (Exception e) {ErrorHandler.defaultHandler.submit(e);}
+	}
+	
+	public Set<Integer> getAllReferencedMetaDataIds(DocExploreDataLink link) throws DataLinkException
+	{
+		Set<Integer> res = new TreeSet<Integer>();
+		
+		List<Integer> bookIds = link.getLink().getAllBookIds();
+		int cnt = 0;
+		for (int bookId : bookIds)
+		{
+			Book book = link.getBook(bookId);
+			getMetaDataIds(book, res);
+			
+			for (int pageNum=1;pageNum<=book.getLastPageNumber();pageNum++)
+			{
+				Page page = book.getPage(pageNum);
+				getMetaDataIds(page, res);
+				
+				for (Region region : page.getRegions())
+					getMetaDataIds(region, res);
+				page.unloadAll();
+			}
+			book.unloadMetaData();
+			cnt++;
+			progress = cnt*.25f/bookIds.size();
+		}
+		
+		cnt = 0;
+		Set<Integer> mdMds = new TreeSet<Integer>();
+		for (int mdId : res)
+		{
+			MetaData md = link.getMetaData(mdId);
+			getMetaDataIds(md, mdMds);
+			cnt++;
+			progress = .25f+cnt*.25f/res.size();
+		}
+		res.addAll(mdMds);
+		
+		return res;
+	}
+	static void getMetaDataIds(AnnotatedObject object, Set<Integer> res) throws DataLinkException
+	{
+		for (Map.Entry<MetaDataKey, List<MetaData>> mds : object.getMetaData().entrySet())
+			for (MetaData md : mds.getValue())
+				res.add(md.getId());
+		object.unloadMetaData();
+	}
+
+	float progress = 0;
+	public float getProgress() {return progress;}
+}